QIAGEN CLC Genomics Workbench Premium expands upon QIAGEN CLC Genomics Workbench, the industry standard platform for bioinformatics computing.
Plugins and modules add a layer of specialized tools and workflows to QIAGEN CLC Genomics Workbench, creating a comprehensive solution for microbial genomics, metagenomics and single cell data analyses.
Microbial and metagenomics
QIAGEN CLC Genomics Workbench Premium delivers tools and workflows for a broad range of bioinformatics needs for microbiome analysis, isolate characterization, functional metagenomics and antimicrobial resistance characterization.
CLC Genomics Workbench Premium 24.0.2 Win/Linux Tested Picture
Microbial profiling: Assemble and annotate high quality reference genomes for critical type strains, and manage your database of reference genomes.
Pathogen and outbreak analysis: Leverage whole genome analysis for epidemiological outbreak investigation. Accurately type and characterize microbial isolates. Monitor outbreaks and track pathogen transmission back to the source using modern phylogenetic tools.
Genome finishing: Short read lengths and repetitive genomic regions often result in fragmented de novo assemblies. To improve results and convert contigs into high quality assemblies a complex process referred to as genome finishing is needed. QIAGEN CLC Genome Finishing Module is an add-on to QIAGEN CLC Genomics Workbench Premium, designed to accelerate and simplify genome finishing, and make this process accessible to life scientists without deep understanding of bioinformatics.
Single-cell analysis
QIAGEN CLC Single Cell Analysis Module enables analysis from raw FASTQ files to clusters of cells with annotated cell types and differentially expressed genes. It also lets you to visualize data from over a million cells at once. Additional functionality includes TCR-repertoire analysis, ATAC-seq support and RNA velocity analysis workflows.
QIAGEN CLC Single Cell Analysis Module was developed based on the best-performing algorithms as assessed by recent independent benchmarking papers. The algorithms have been re-implemented to scale to the largest datasets and run on a wide range of hardware.
Ultra-fast FASTQ to VCF processing
QIAGEN CLC LightSpeed Module provides tools and workflows for ultrafast FASTQ-to-VCF processing. Resulting VCFs can be uploaded to QIAGEN Clinical Insights (QCI) for interpretation.
In our recent benchmark study, we showed that using our ultra-fast QIAGEN CLC LightSpeed technology our FASTQ to VCF hereditary workflow analyzes 34x human WGS samples in just 25 minutes for less than $1.
